PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017819m
Common NameCARUB_v10017819mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 275aa    MW: 30397.3 Da    PI: 4.805
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017819mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-2972130259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY  +Hnh+
  Carubv10017819m  72 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 130
                      69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3063132IPR003657WRKY domain
PROSITE profilePS5081131.50266132IPR003657WRKY domain
SuperFamilySSF1182902.48E-2567132IPR003657WRKY domain
SMARTSM007746.4E-3471131IPR003657WRKY domain
PfamPF031061.1E-2473130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MHHRRAAIQE SDDEEDETYN DAVPESPSSC EDSKISKPTP KKSRRNVEKR VVSVPIADVE  60
GSKSRGEVYP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS KGCPARKQVE RSRVDPSKLM  120
ITYACDHNHP FPSSAANNKS HHRSSVVLKT AKKEEEYEEE EEEELTVAAV EEPPAGLDLS  180
HVDSPLLLGG CYSEVGEFGW FYDASISSSS GSSNFLDVTL ERGFSEGGEE DDSLFGDLGD  240
LPDCASVFRR GTVATEDQHR RCDFGAIPFC DSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-1761133778Probable WRKY transcription factor 4
2lex_A2e-1761133778Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0842330.0AY084233.1 Arabidopsis thaliana clone 100465 mRNA, complete sequence.
GenBankBT0294700.0BT029470.1 Arabidopsis thaliana At3g58710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291660.10.0hypothetical protein CARUB_v10017819mg
SwissprotQ93WV51e-177WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLR0HL080.0R0HL08_9BRAS; Uncharacterized protein
STRINGAT3G58710.11e-177(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124781930
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.11e-168WRKY DNA-binding protein 69